Bertini is a general-purpose solver, written in C, that was created for research about polynomial continuation. Caffe is a deep learning framework made with expression, speed, and modularity in mind. API for dynamic binary instrumentation. Gene Prediction in Bacteria, archaea, Metagenomes and Metatranscriptomes. Current support includes multi-dimensional mesh topology, mesh geometry, and mesh adjacency information, n-dimensional hashed-tree data structures, graph partitioning interfaces,and dependency closures. It also supports unique effects not seen in other capture tools including the ability to automatically locate and enhance the active window. Free for personal use. 
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Lattice QCD describes the property of protons, neutrons and neucleons in terms of more fundamental interacting elementary particles gluon and quarks. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
The Cooperative Computing Tools cctools enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids. This allows fast reading on the appropriate machine, but the files are still portable but read more slowly on other machines. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance. The main philosophy is to provide high-level track reconstruction modules that can be used for any tracking detector.
Package List — Spack documentation
Tracer is a graphical tool for visualization and diagnostics of MCMC output. It is especially valuable in programs that have several blocks of text that must be kept synchronized. If conflicts are encountered, figure out exactly which pairs of commits conflict, and present the user with one pairwise conflict at a time for resolution.
CLAW Compiler targets performance portability problem in climate and weather application written in Fortran.
Caliper is a webhot instrumentation and performance measurement framework. Choose the appropriate selection mode, select a text region on the screen, wait while Screen OCR recognizes it takes secondsand then just copy it to the clipboard.
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Distributed-memory dense and sparse-direct linear algebra and optimization library. Gene Prediction in Bacteria, archaea, Metagenomes and Metatranscriptomes. Memory Efficient Serialization Library. FImpute uses an webshto sliding window approach to efficiently exploit relationships or haplotype similarities between target and reference individuals. Lightweight user-defined software stacks for HPC.
ASP offers a simple and powerful modeling language to describe combinatorial problems as logic programs. Also you can capture only the Taskbar as an active window.
Software for haplotype reconstruction, and estimating missing genotypes from population data. CoSP2 represents a sparse linear algebra parallel algorithm for calculating the density matrix in electronic tructure theory. Built-in image editor provides basic capabilities to annotate screenshots and make them talk.
The DSDP software is a free open source implementation of an interior- 1.91.1 method for semidefinite programming. Apart from algorithmic code, this project also provides an event data model for the description of track parameters and measurements. DD4hep is a software framework for providing a complete solution for full detector description geometry, materials, visualization, readout, alignment, calibration, etc.
Geant4 data files for radio-active decay hadronic processes.
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It is easy to use, versatile, well documented, and fast. A tool designed to provide fast all-in-one preprocessing for FastQ files. You can capture the full screen or just the active window, the client area, or any rectangular or circular area with or without the cursor. Indeed, no single release has been published by Rice university for the last few years and since many software Octave, Scilab, R, Matlab This extension defines a protcol that allows X window managers to better interact with the Mac OS X Aqua user interface when running X11 in a rootless mode.
A collection of C routines that can be used to access the Sesame data library. You can either capture weshot entire page fully scrolled in full size or tweak the browser window and resizing settings to create a thumbnail image of the site.
Freeware weebshot Donations appreciated. GConf is a system for storing application preferences. It is entirely orientated towards rooted, time- measured phylogenies inferred using strict or relaxed molecular clock models.
A single molecule sequence assembler for genomes large and small.
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